Single molecule biophysics and topology

1-       Petrásek Z, Hoege C, Mashaghi A, Ohrt T, Hyman A & Schwille P, Characterization of protein dynamics in asymmetric cell division by scanning fluorescence correlation spectroscopy. Biophysical Journal 95(11), 5476-5486 (2008)

2-        Jakobi, AJ, Mashaghi A, Tans SJ, Huizinga EG, Calcium modulates force sensing by the von Willebrand factor A2 domain. Nature communications 2, 385 (2011)

3-         Mashaghi A, Vach PJ, and Tans SJ, Noise reduction by signal combination in Fourier space applied to drift correction in optical tweezers, Reviews of Scientific Instruments 82, 115103 (2011)

4-        Mashaghi A*1, Moayed F1, Tans SJ, A polypeptide-DNA hybrid with selective linking capability applied to single molecule nano-mechanical measurements using optical tweezers, PloS One 8(1) e54440 (2013) - 1equal contribution

5-     Singhal K, Vreede J, Mashaghi A, Tans SJ, Bolhuis PG, Hydrophobic Collapse of Trigger Factor Monomer in Solution, PloS One 8(4) e59683 (2013)

6-      Mashaghi A, Kramer G, Bechtluft P, Zachmann-Brand B, Driessen AJM, Bukau B, Tans SJ, Reshaping of a protein’s conformational search by the chaperone Trigger Factor, Nature 500, 98-101 (2013)

7-        Mashaghi A* and Katan Allard, A physicist’s view of DNA. De Physicus, 24e, 3, 59-61 (2013)

8-       Mashaghi A*, Kramer G, Mayer MP, Tans SJ, Chaperone action at the single-molecule level, Chemical Reviews, 114 (1), 660–676 (2014)

9-      Mashaghi A, Mashaghi S, Tans SJ, Misfolding of luciferase at the single-molecule level, Angewandte Chemie 53(39):10390-3 (2014)

10-      Mashaghi A*, van Wijk RJ, Tans SJ, Circuit topology of proteins and nucleic acids, Structure 22(9), 1227–1237 (2014)

11-      Mashaghi A*1, Bezrukavnikov S1, van Wijk RJ, Chan Gu C, Yang LJ, Gao YQ, Tans SJ, Trehalose facilitates DNA melting: a single-molecule optical tweezers study, Soft Matter 10, 7269-7277 (2014) - 1equal contribution

12-   Mugler A, Tans SJ, Mashaghi A*, Circuit topology of self-interacting chains: implications for folding and unfolding dynamics, Physical Chemistry Chemical Physics 16(41):22537-44 (2014)

13-   Mashaghi A1, Vlijm R1, Modesti M, Dekker C, Experimental phase diagram of negatively supercoiled DNA measured by magnetic tweezers and fluorescence, Nano Scale 7, 3205 - 3216 (2015)  - 1equal contribution 

14-   Mashaghi A*, Ramezanpour A, Circuit topology of linear polymers: a statistical mechanical treatment, RSC Advances 5, 51682-51689 (2015)

15-     Singhal K, Vreede J, Mashaghi A, Tans SJ, Bolhuis P, Molecular insight in the effect of Trigger Factor on the Maltose Binding Protein folding intermediates, PloS Computational Biology 11(10): e1004444 (2015)

16-      Mashaghi A*, Ramezanpour A, Distance measures and evolution of polymer chains in their topological space, Soft Matter 11(33):6576-85 (2015)

17-    Kalisnik Verovsek S, Mashaghi A*, Extended topological persistence and contact arrangements in folded linear molecules. Frontiers in Applied Mathematics and Statistics 2, 6 (2016)

18-    Mashaghi A, Bezrukavnikov S, Minde D, Kityk R, Zachmann-Brand B, Mayer M, Kramer G, Bukau B, and Tans SJ, Functional plasticity in Hsp70 enabled by diverse modes of client binding. Nature 539(7629):448-451 (2016)

19-      Ungelenk S, Moayed F, Scharf A, Mashaghi A, Tans SJ, Mayer MP, Mogk A, Bukau B, Small heat shock proteins hold stress-aggregated proteins in near-native conformation for efficient refolding, 7:13673 Nature Communications (2016)

20-     Wruck F, Avellaneda MJ, Koers EJ, Minde DP, Mayer MP, Kramer G, Mashaghi A, Tans SJ, Protein folding mediated by trigger factor and Hsp70: new insights from single-molecule approaches. Journal of Molecular Biology Advance Online (2017)

21-     Nikoofard N, and Mashaghi A*, Implications of molecular topology for nanoscale mechanical unfolding. Journal of Physical Chemistry B 122(42):9703-9712 (2018)

22-    Heidari M, Satarifard V, & Mashaghi A*, Mapping a single-molecule folding process onto a topological space. Physical Chemistry Chemical Physics 21(36), 20338-20345 (2019)

23-    Maleki E, Koohi S, Kavehvash Z, Mashaghi A*, OptCAM: An ultra‐fast all‐optical architecture for DNA variant discovery. Journal of Biophotonics, e201900227 (2019)

24-     Schullian O, Woodard J, Tirandaz A, Mashaghi A*, A Circuit Topology Approach to Categorizing Changes in Biomolecular Structure. Frontiers in Physics 8, 5 (2020)

              Selected as Editor's pick 2021

25-    Adams C, Devadoss J, Elhamdadi M, Mashaghi A*, Knot Theory for Proteins: Gauss Codes, Quandles and Bondles. Journal of Mathematical Chemistry 58, 1711–1736 (2020)

26-      Scalvini B, Sheikhhassani V, Woodard J, Aupič J, Dame RT, Jerala R, Mashaghi A*, Topology of Folded Molecular Chains: From Single Biomolecules to Engineered Origami. Trends in Chemistry 2(7), P609-622 (2020)

27-     Heidari M, Schiessel H, Mashaghi A*, Circuit Topology Analysis of Polymer Folding Reactions. ACS Central Science 2(7) P609-622 (2020)

28-     Golovnev A, Mashaghi A*, Generalized Circuit Topology of Folded Linear Chains. iScience 23(9), 101492 (2020)

29-      Razbin M, Mashaghi A*, Elasticity of Connected Semiflexible Quadrilaterals. Soft Matter 17(1), 102-112 (2021)

30-    Ceniceros J, Elhamdadi M, Mashaghi A*, Coloring Invariant for Topological Circuits in Folded Linear Chains. Symmetry 13 (6), 919 (2021)

31-      Ceniceros J, Elhamdadi M, Mashaghi A*, Enhancement of the Coloring Invariant for Folded Molecular Chains. Journal of Mathematical Physics 62, 073501 (2021)

32-   Mashaghi A*, Circuit topology of folded chains. Notices of The American Mathematical Society 68(3), 420-423 (2021)

33-    Scalvini B, Sheikhhassani V, Mashaghi A*, Topological principles of protein folding. Physical Chemistry Chemical Physics 23, 21316-21328 (2021)

34-     Mashaghi A*, van der Veen R, Polynomial invariant of molecular circuit topology. Symmetry 13 (9), 1751 (2021)

35-    Golovnev A, Mashaghi A*, Circuit topology for bottom-up engineering of molecular knots. Symmetry 13(12), 2353 (2021)

36-      Golovnev A, Mashaghi A*, Topological analysis of folded linear molecular chains. Topological Polymer Chemistry: concepts and practices 105-114, (2022) ISBN-10: 981166806X

37-      Heling L.W.H.J., Banijamali SE, Satarifard V, Mashaghi A*, Programmed polymer folding. Topological Polymer Chemistry: concepts and practices 159-176 (2022) ISBN-10: 981166806X

38-       Scalvini B, Schiessel H, Golovnev A, Mashaghi A*, Circuit topology analysis of cellular genome reveals signature motifs, conformational heterogeneity and scaling. iScience 23(1), 103866 (2022)

Systems biophysics 

39-      Ramezanpour A, Karimipour V and Mashaghi A*. Generating correlated networks from uncorrelated ones, Physical Review E 67, 046107 (2003)                      

40-       Mashaghi A*, Ramezanpour A and Karimipour V. Investigation of a protein complex network, European Physical Journal B 41, 113–121 (2004)

41-     Mashaghi A* and Dekker C, Cell division: towards systems and synthetic biology approaches, Systems and Synthetic Biology, 8:173-178 (2014)

42-    van Wijk R, Tans S, ten Wolde PR, Mashaghi A*, Non-monotonic dynamics and crosstalk in signaling pathways and their implications for pharmacology, Scientific Reports 5, 11376 (2015)

43-     Azimzade Y, Mashaghi A*, Search efficiency of biased migration towards stationary or moving targets in heterogeneously structured environments. Physical Review E 96(6) 062415 (2017)

44-       Ramezanpour A and Mashaghi A*, Toward first principle medical diagnostics: on the importance of disease-disease and sign-sign interactions. Frontiers in Physics 5, 32 (2017)

45-    Ghafari M and Mashaghi A*, On the role of topology in regulating transcriptional cascades. Physical Chemistry Chemical Physics 19, 25168-25179 (2017).

46-     Mashaghi A* and Ramezanpour A, Statistical physics of medical diagnostics: Study of a probabilistic model. Physical Review E 97 (3), 032118 (2018)

47-     Ramezanpour A, Mashaghi A*, Disease evolution in reaction networks: Implications for a diagnostic problem. PLOS Computational Biology 16(6), e1007889 (2020)

48-     Ramezanpour A, Beam AL, Chen JH, Mashaghi A*, Statistical physics for medical diagnostics: Learning, inference, and optimization algorithms. Diagnostics 10(11), 972 (2020)


Bioengineering and bio-nanotechnology

49-      Khan TR, Grandin HM, Mashaghi A, Textor M, Reimhult E and Ilya Reviakine. Lipid Redistribution in Phosphatidylserine-containing Vesicles Adsorbing on Titania. Biointerphases 3(2) pp FA90-FA95 (2008)

50-    Mashaghi A, Swann M, Popplewell J, et al., Optical anisotropy of supported lipid structures probed by waveguide spectroscopy and its application to study of supported lipid bilayer formation kinetics. Analytical Chemistry 15;80(10):3666-76 (2008)

51-    Amstad E, Zürcher S, Mashaghi A, Wong JY, Textor M, Reimhult E, Surface Functionalization of Single Superparamagnetic Iron Oxide Nanoparticles for Targeted Magnetic Resonance Imaging, Small 5(11) 1334–1342 (2009)

52-      Baumann MK, Amstad E, Mashaghi A,  Textor M, and  Reimhult E,  Characterization of supported lipid bilayers incorporating the phosphoinositides phosphatidylinositol 4,5-biphosphate and phosphoinositol-3,4,5-triphosphate by complementary techniques. Biointerphases 5, 114-119 (2010)

53-      Nalam PC, Clasohm JN, Mashaghi A and Spencer ND, Macrotribological Studies of Poly(L-lysine)-graft-Poly(ethylene glycol) in Aqueous Glycerol Mixtures Tribology Letters 37, 541-552 (2010)

54-       Mashaghi A*, Partovi-Azar P, Jadidi T, Maass P, Nafari N, Rahimi Tabar MR, Bonn M and Bakker HJ, Hydration strongly affects the molecular and electronic structure of membrane phospholipids. Journal of Chemical Physics 136(11), 1-5 (2012)

Selected for the April 1, 2012 issue of Virtual Journal of Biological Physics Research.

55-    Kaufmann S, Ilg K, Mashaghi A, Textor M, Priem B, Aebi M and Reimhult E, Supported lipopolysaccharide bilayers. Langmuir 28 (33), 12199–12208 (2012)

56-      Mashaghi A*, Partovi-Azar P, Jadidi T, Maass P, Nafari N, Esfarjani K, Rahimi Tabar MR, Bakker HJ and Bonn M, Interfacial water facilitates energy transfer by inducing extended vibrations in membrane lipids, Journal of Physical Chemistry B 116(22), 6455–6460 (2012)

57-   Mashaghi S, Jadidi T, Koenderink G, Mashaghi A*, Lipid Nanotechnology, International Journal of Molecular Sciences 4, 1 (2013) – invited review – Most Accessed Paper 2014

Highlighted in: Science Letter, March 22, 2013, page 99.  

58-      Mashaghi A, Partovi-Azar P, Jadidi T, et al. Enhanced Auto-ionization of Water at Phospholipid Interfaces. Journal of Physical Chemistry C 117 (1), 510–514 (2013)

59-    Jadidi T, Anvari M, Mashaghi A*, Sahimi M, Tabar MRR, Vibrational lifetimes of hydrated phospholipids, Europhysics Letters 102, 28008 (2013)

60-    Jadidi T, Seyed-Allaei H, Tabar MRR, Mashaghi A*, Poisson's ratio and Young's modulus of lipid bilayers in different phases, Frontiers in Bioengineering and Biotechnology 2(8), 1-6 (2014)

61-     Mashaghi A*, Mashaghi S, Reviakine I, Heeren RMA, Sandoghdar V, Bonn M, Label-Free Characterization of Bio-Membranes: from Structure to Dynamics, Chemical Society Reviews 43, 887-900 (2014)

62-    Azhdarzadeh M, Saei AA, Sharifi S, Hajipour MJ, Alkilany AM, Sharifzadeh M, Ramazani F, Laurent S, Mashaghi A, Mahmoudi M, Nanotoxicology: advances and pitfalls in research methodology, Nanomedicine 10(18):2931-52 (2015)

63-      Nikoofard N, Mashaghi A*, Topology sorting and characterization of folded polymers using nano-pores, Nanoscale 10.1039/C5NR08828C (2016)

64-    A.A. Saei, M. Yazdani, S.E. Lohse, Z. Bakhtiary, V. Serpooshan, M. Ghavami, M. Asadian, S. Mashaghi, E.C. Dreaden, A. Mashaghi, and M. Mahmoudi, Nanoparticle Surface Functionality Dictates Cellular and Systemic Toxicity. Chemistry of Materials, 29 (16): 6578–6595 (2017).

65-      Junaid A, Mashaghi A, Hankemeier T, Vulto P, An End-User Perspective on Organ-on-a-Chip: Assays and Usability Aspects. Current Opinion in Biomedical Engineering 1, 15-22 (2017).

66-    Heidari M, Satarifard V, Tans SJ, Ejtehadi MR, Mashaghi S and Mashaghi A*, Topology of internally constrained polymer chains. Physical Chemistry Chemical Physics 19(28): 18389-18393 (2017).

67-    Satarifard V, Heidari M, Mashaghi S, Tans SJ, Ejtehadi MR and Mashaghi A*, Topology of polymer chains under nanoscale confinement. Nanoscale 9, 12170 – 12177 (2017).

68-        Sheikh-Hasani V, Babaei M, Azadbakht A, Pazoki-Toroudi H, Mashaghi A, Moosavi-Movahedi AA, Reihani SNS. Atorvastatin treatment softens human red blood cells: an optical tweezers study. Biomedical Optics Express9(3) 1256-1261 (2018)

69-   Gharooni M, Alikhani A, Moghtaderi H, Abiri H, Mashaghi A, Abbasvandi F, Khayamian MA, Miripour ZS, Zandi A, Abdolahad M. Bioelectronics of the cellular cytoskeleton: monitoring cytoskeletal conductance variation for sensing drug resistance. ACS Sensors 4(2):353-362 (2019)

70-    Ali A, Abouleila Y, Shimizu Y, Hiyama E, Emara S, Mashaghi A*, Hankemeier T. Single-cell metabolomics by mass spectrometry: advances, challenges, and future applications. TrAC Trends in Analytical Chemistry 120, 115436 (2019)

71-    Amani H, Habibey R, Shokri F, Hajmiresmail SJ, Akhavan O, Mashaghi A*, Pazoki-Toroudi H. Selenium nanoparticles for targeted stroke therapy through modulation of inflammatory and metabolic signaling. Scientific reports 9, 6044 (2019)

72-      Evers, TM, Hochane M, Tans, SJ, Heeren, RM, Semrau, S, Nemes P, Mashaghi A*, Deciphering metabolic heterogeneity by single-cell analysis. Analytical chemistry 91 (21), 13314-13323 (2019)

73-     Rahmani M, Khani MM, Rabbani S, Mashaghi A, Noorizadeh F, Faridi-Majidi R, Ghanbari H, Development of poly (mannitol sebacate)/poly (lactic acid) nanofibrous scaffolds with potential applications in tissue engineering. Materials Science and Engineering: C 110626 (2020)

74-     Rahmani M, Faridi-Majidi R, Khani M, Mashaghi A, Noorizadeh F, Ghanbari H, Cross-linked PMS/PLA nanofibers with tunable mechanical properties and degradation rate for biomedical applications. European Polymer Journal 109633 (2020)

75-      Junaid A, Tang H, van Reeuwijk A, Abouleila Y, Wuelfroth P, van Duinen V, Stam W, van Zonneveld AJ,  Hankemeier T, Mashaghi A*, Ebola Hemorrhagic Shock Syndrome-on-a-Chip. iScience 23(1), 100765 (2020)

76-       Tang H, Abouleila Y, Si L, Ortega-Prieto A, Mummery CL, Ingber DE, Mashaghi A*, Human organs-on-chips for virology. Trends in Microbiology (2020)

77-       Junaid A, Schoeman J, Yang W, Stam W, Mashaghi A, Zonneveld AJv, Hankemeier T, Metabolic response of blood vessels to TNFα. Elife 9, e54754 (2020)

78-      Manafi N, Shokri F, Achberger K, Hirayama M, Mohammadi MH, Noorizadeh F, Hong J, Liebau S, Tsuji T, Quinn PMJ, Mashaghi A*, Organoids and organ chips in ophthalmology. The Ocular Surface 19, 1-15 (2021)

79-      Junaid A, van Duinen V, Stam W, Dólleman S, Yang W, de Rijke Y, Endeman H, van Kooten C, Mashaghi A, de Boer H, van Gils J, Hankemeier T, van Zonneveld AJ, A microfluidics‐based screening tool to assess the impact of blood plasma factors on microvascular integrity. Advanced Biology 2100954 (2021)

80-     Tang H, Abouleila Y, Mashaghi A*, Lassa hemorrhagic shock syndrome‐on‐a‐chip. Biotechnology and Bioengineering 118:1405–1410 (2021)



Medicine and immunology

81-     Zamani M, Tabatabaiefar MA, Mosayyebi S, Mashaghi A, Mansouri P, Possible association of the CD4 gene polymorphism with vitiligo in an Iranian population. Clinical and Experimental Dermatology 35, 521-425 (2010)

82-       Xu J, Hong J, Sun X, Liu Z, Mashaghi A, Inomata T, Lu Y, Li Y, Wu D, Yang Y, Wei A, Zhao Y, Lu C. Lacrimal passage-probing and tobramycin/dexamethasone ophthalmic ointment infiltration: a minimally invasive surgical procedure for incomplete nasolacrimal duct obstruction. Medicine 94(36):e1483 (2015)

83-       Xu J, Liu Z, Mashaghi A, Sun X, Lu Y, Wu D, Yang Y, Wei A, Zhao Y, Lu C, Hong J, Novel therapy for primary canaliculitis: a pilot study of intracanalicular ophthalmic corticosteroid/antibiotic combination ointment infiltration. Medicine 94(39): e1611 (2015)

84-     Mashaghi A1, Inomata T1, Di Zazzo A1, Dana R, Ocular surgical models for immune and angiogenic responses. Journal of Biological Methods 2(3):e27 (2015) - 1equal contribution 

85-      Jiang D, Xiao X, Fu T, Mashaghi A, Liu Q, Hong J, Transient tear film dysfunction after cataract surgery in diabetic patients. Plos One 11(1):e0146752 (2016)

86-      Hong J, Zhong T, Li H, Xu J, Ye X, Mu Z, Lu Y, Mashaghi A, Li Q, Sun X, Tan M, liu Z, Xu J. Ambient air pollution, weather changes and outpatient visits for allergic conjunctivitis: a retrospective registry study. Scientific Reports 6:23858 (2016)

87-   Mashaghi A, Marmalidou A, Tehrani M, Grace PM, Pothoulakis C, Dana R, Neuropeptide substance P and the immune response. Cellular and Molecular Life Sciences 73(22):4249-4264 (2016)

88-      Di Zazzo A, Roberti G, Pavese D, Mashaghi A, Baptista Abud T, Bonini S. Safety and efficacy of topical palmitoylethanolamide 0.05% for dry eye-like syndrome in patients under glaucoma treatment: a randomized clinical trial. Journal of Ocular Pharmacology and Therapeutics 33, 9. (2017)

89-    Tahvildari M, Emami-Naeini P, Omoto M, Mashaghi A, Chauhan SK, Dana R, Treatment of donor corneal tissue with immunomodulatory cytokines: a novel strategy to promote graft survival in high-risk corneal transplantation. Scientific Reports 7(1): 971 (2017)

90-      Mashaghi A, Inomata T, Di Zazzo A, Lee S-M, Homer C, and Dana R, Kinetics of angiogenic responses in high-risk corneal transplantation. Cornea 36(4): 491-496 (2017)

91-     Di Zazzo A, Roberti G, Mashaghi A, Batista Abud T, Pavese D, Bonini S, Use of Topical Cannabinomimetic Palmitoylethanolamide in Ocular Surface Disease Associated with Antiglaucoma Medications. Journal of Ocular Pharmacology and Therapeutics 33(9) 670-677 (2017)

92-     Mashaghi A, Hong J, Chauhan S, Dana R. Aging and ocular surface immunity. British Journal of Ophthalmology 101(1):1-5 (2017)

93-    Di Zazzo A, Tahvildari M, Subbarayal B, Inomata T, Dohlman T, Mashaghi A, Chauhan S, and Dana R, Pro-angiogenic effect of CD4+ T cells in corneal transplantation. Transplantation 101(4):778-785 (2017)

94-     Hong J, Yang Y, Cursiefen C, Mashaghi A, Wu D, Liu Z, Sun X, Dana R, Xu J, Optimising keratoplasty for Peters' anomaly in infants using spectral-domain optical coherence tomography. British Journal of Ophthalmology 101(6):820-827 (2017)

95-       Mashaghi A, Inomata T, Hong J, Nakao T, and Dana R, Scaling and maintenance of corneal thickness during aging. PLoS One 12(10):e0185694 (2017)

96-    Azimzade Y, Hong J, and Mashaghi A*, Immunophysical analysis of corneal neovascularization: mechanistic insights and implications for pharmacotherapy. Scientific Reports 7, 12220 (2017).

97-      Mittal SK, Mashaghi A, Amouzegar A, Li M, Foulsham W, Sahu SK, Chauhan SK. Mesenchymal Stromal Cells Inhibit Neutrophil Effector Functions in a Murine Model of Ocular Inflammation. Invest Ophthalmol Vis Sci. 59(3):1191-1198 (2018)

98-      Burgos R, Ramautar R, Van Wijk EPA, Hankemeier T, Van Der Greef J, Mashaghi A*, Pharmacological targeting of ROS reaction network in myeloid leukemia cells monitored by ultra-weak photon emission. Oncotarget 9:2028-2034 (2018)

99-       Eslani M, Putra I, Shen X, Hamouie J, Tadepalli A, Anwar KN, Kink JA, Ghassemi S, Agnihotri G, Reshetylo S, Mashaghi A, Dana R, Hematti P, Djalilian AR. Cornea Derived MSCs Therapeutically modulate macrophage immunophenotype and angiogenic function. Stem Cells 36(5):775-784 (2018)

100-    Ramezanpiur A and Mashaghi A*, Uncovering hidden disease patterns by simulating clinical diagnostic processes. Scientific reports 8 (1), 2436 (2018)

101-   Wu D, Zhang J, Qian T, Dai Y, Mashaghi A, Xu J, Hong J, IFN-γ regulates the expression of MICA in human corneal epithelium through the miRNA-4448 and NFkB. Frontiers in Immunology 9, 1530 (2018)

102-    Cui X, Yang Y, Li Y, Huang F, Zhao Y, Chen H, Mashaghi A, Hong J, Correlation between anterior chamber volume and corneal biomechanical properties in human eyes. Frontiers in Bioengineering and Biotechnology 7, 379 (2019) 

103-    Heidari M, Noorizadeh F, Wu K, Inomata T, Mashaghi A*, Dry eye disease: emerging approaches to disease analysis and therapy. Journal of clinical medicine 8(9), 1439 (2019)

104-   Di Zazzo A, Lee SM, Sung J, Niutta M, Coassin M, Mashaghi A*, Inomata T, Variable Responses to Corneal Grafts: Insights from Immunology and Systems Biology. Journal of Clinical Medicine 9(2), 586 (2020)

105-   Zazzo AD, Yang W, Coassin M, Micera A, Antonini M, Piccinni F, Piano MD, Kohler I, Harms AC, Hankemeier T, Bonini S, Mashaghi A*, Signaling lipids as diagnostic biomarkers for ocular surface cicatrizing conjunctivitis. Journal of Molecular Medicine 98(5):751-76 (2020)

106-   Eckert J, Abouleila Y, Schmidt T, Mashaghi A*, Single cell micro-pillar-based characterization of endothelial and fibroblast cell mechanics. Micro 1(2), 242-249 (2021)

107-   Evers T, Holt L, Alberti S, Mashaghi A*, Reciprocal regulation of cellular mechanics and metabolism. Nature Metabolism 3, 456–468 (2021)

108-      Abouleila Y, Ali A, Masuda K, Mashaghi A*, Shimizu Y*, Capillary microsampling-based single-cell metabolomics by mass spectrometry and its applications in medicine and drug discovery. Cancer Biomarkers in press (2022)

109-      Sheikhhassani V, Evers TMJ, Lamba S, Shokri F, Mashaghi A*, Single cell force spectroscopy reveals mechano-modulatory effects of atorvastatin on erythrocytes at physiological and febrile temperatures. Soft Matter Advance Article (2022)

110-       Evers T, Sheikhhassani V, Haks MC, Storm C, Ottenhoff THM, Mashaghi A*, Single cell analysis reveals chemokine mediated differential regulation of monocyte mechanics. iScience 25(1) 103555 (2022)



Edited/(co-)authored books and collections:

Cell Division, Editor: Alireza Mashaghi, 97 pages, Year: 2014, Publisher: Springer UK, ISSN: 1872-5325

Topological Polymer Chemistry: Concepts and Practices, Pages: 436, Year: 2022, Publisher: Springer Nature, ISBN: 9811668078, 9789811668074

Biophysics of Molecular Chaperones, 412 Pages, Year: 2023, Publisher: Royal Society of Chemistry, ISBN: 978-1-83916-282-4


PhD dissertations:

Single-cell mechanics for disease biology and pharmacology (Tom evers)

Complexity and control of biochemical reaction systems for medical translation applications (Mehrad Babaei)

Topological decoding of biomolecular fold complexity (Barbara Scalvini)

Bioengineering and biophysics of viral hemorrhagic fever (Huaqi Tang)

Lipid signaling and inflammation: metabolomics for better diagnosis and treatment strategy (Wei Yang)

Microengineered Human Blood Vessels For Next Generation Drug Discovery (Abidemi Junaid)

For more information, please see: Google Scholar Link